Research tools

The SRBR Education Committee has compiled a list of resources that allow students and researchers to seek answers to new questions related to biological rhythms. This includes links to open access datasets that may support student-directed research as well as data analysis tools that may help in the analysis of these data sets.

Open Access data sets

These data sets were found by searching on Google data set search, Open science framework, Datadryad.org. If you know of any others, please email us at info@srbr.org.

The Costs of Sleeping In

Effects of Light at Night on Reproduction

Natural Light Exposure, Sleep and Depression

Social jetlag, food consumption, and meal times

Effects of circadian clock disruption on SCN and peripheral tissues

Effects of feeding rhythms on mouse liver

Open data on circadian studies of plants

BioDare2

CircaDB – Circadian Gene Expression Data Base

 

Analysis tools

This list contains links to tools that can be used for the analysis of biological time-series data. If you know of any others, please email us at info@srbr.org.

  • CATkit, this website documents core techniques for analyzing circadian rhythms and describes the CAT analysis toolkit that can be used to perform these analyses. The CAT package was developed by Gierke and Cornelissen  (2016).
  • JTK_Cycle, an algorithm to identify rhythmic components in large, genome-scale data sets and estimate their period length, phase, and amplitude, developed by Hughes et al. (2010).